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Identification of a major qtl rna-seq

Web5 feb. 2024 · QTL detection was performed using package “qtl” (vs. 1.44–9) in two steps, the first scan determining co-factors and the second scan identifying robust QTL, taking … WebThe first QTL mapped by QTL-seq overlapped with the major QTL detected by the QTL linkage analysis in the 1.0 to 1.9 Mb region of chromosome 3. Six of the QTLs from chromosomes 1, 2, 3, 9, and 11 contained the Jupiter allele, while the two QTLs from chromosomes 3 and 8 were Trenasse alleles ( Table 6 ).

Identification of a candidate QTG for seed number per silique by ...

Web5 feb. 2024 · A novel quantitative trait locus (QTL) named qCmPMR-12 for resistance to PM on chromosome 12 was identified, which ranged from 22.0 Mb to 22.9 Mb. RNA-Seq analysis indicated that the... Web23 nov. 2024 · RNA-seq provides useful data to both map loci underpinning important crop traits and dissect the role these genes play within expression of these traits as well as identify novel QTL. Bulk segregant RNA-seq approaches have identified QTL underpinning important agronomic traits such as kernel row number in maize (Liu et al. 2016a, b), pod … batam pppk https://houseoflavishcandleco.com

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Web22 jun. 2024 · In this study, three major QTLs on chromosomes A05, B02, and B06 were determined by applying the QTL-seq approach in a recombinant inbred line (RIL) population and it was found that the DEGs were widely distributed in the ubiquitin–proteasome pathway, the serine/threonine-protein pathway, signal transduction of hormones and … WebA major QTL and candidate genes controlling capsaicinoid content in the pericarp were identified by QTL-seq and RNA-seq in Capsicum chinense. Capsaicinoid biosynthesis … Web10 aug. 2024 · Recently, a method of combining QTL-seq and RNA-seq was developed, and it can identify chromosome fragments or genes that can be verified by each other. Lately, a major QTL on chromosome 6 for capsaicinoid content was identified using QTL-seq and high-density genetic maps, and candidate genes were revealed by combining … tango private broadcast

Bulked Segregant RNA-seq Reveals Differential Expression and …

Category:Combining QTL-seq and linkage mapping to fine map a candidate …

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Identification of a major qtl rna-seq

Integrating GWAS, QTL, mapping and RNA-seq to identify

Web19 apr. 2016 · This study mapped a major QTL influencing four fiber quality traits to a 0.28-cM interval and identified three candidate genes by RNA-Seq and RT-PCR analysis. Integration of fine mapping and RNA-Seq is a powerful strategy to uncover candidates for QTL in large genomes. Background Web2 nov. 2024 · RNA samples were submitted to the Genome Institute of Singapore (GIS) for library preparation, RNA-seq and subsequent bioinformatic analysis for differential gene …

Identification of a major qtl rna-seq

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Web23 mrt. 2024 · Quantitative trait locus (QTL) mapping approaches that employ next-generation sequencing (NGS), QTL sequencing and RNA-seq are powerful in identifying … Web7 feb. 2024 · Kernel row number is an important component of grain yield in maize. With development of classical quantitative trait loci (QTL) mapping and modern RNA-seq, numerous QTL and tissue-specific gene expression data were accumulated in previous studies. In this paper, a total of initial 373 QTL for grain yield (GY) and kernel row …

WebThe first QTL mapped by QTL-seq overlapped with the major QTL detected by the QTL linkage analysis in the 1.0 to 1.9 Mb region of chromosome 3. Six of the QTLs from … Web1 sep. 2024 · We used CIM method to determine the QTLs resistant to SCR in each of the three environments. In total four QTLs were detected, in which one QTL (qSCR1) was located on chromosome 5, two QTLs (qSCR2-1 and qSCR2-2) were located on chromosome 9, and one QTL (qSCR3) was located on chromosome 10 (Table 1).All of …

Web1 feb. 2024 · By combining QTL mapping and dynamic RNA-seq, here we identified a candidate gene BnaC09.APT5, which exhibited differential expression pattern between … WebGraduated in Biology (bachelor's degree in Genetics), Master's degree in Genetics, Ph.D in Genetics and Molecular Biology. I have extensive …

Web16 apr. 2024 · For chlorosis and necrosis traits, the major QTL explained 47.24% and 38.59% of the phenotypic variance, respectively. RNA-Seq analysis of the parental …

Web20 sep. 2024 · The RNA samples of the two bulks and the two parents were sequenced for SNPs identification. Stem rust resistance QTL was validated on chromosome 2U of Ae. umbellulata in the same region in … ba-tampteWeb9 mrt. 2024 · Combining QTL-seq, QTL-mapping and RNA-seq identified a major QTL and candidate genes, which contributed to the development of KASP markers and … batam print kdaWeb21 mrt. 2024 · A major fraction of loci identified by genome-wide association studies (GWASs) lead to alterations in alternative splicing, but interpretation of how such alterations impact proteins is hindered by the technical limitations of short-read RNA-seq, which cannot directly link splicing events to full-length transcript or protein isoforms. Long-read RNA … ba tampte deli mustardWeb23 mrt. 2024 · Fine mapping narrowed down BnaC08cqDTF to an 86-kb region on chromosome C08. The region harbored fifteen genes. After comparative analyses of the … bat ampsWebWaterlogging has increasingly become one of the major constraints to maize productivity in some maize production zones because it causes serious yield loss Bulked segregant RNA-seq (BSR-seq) has been widely applied to profile candidate genes and map associated Single Nucleotide Polymorphism (SNP) markers in many species In this study, ten … batam ppkm levelWeb19 feb. 2024 · Ten QTLs for seed Fe and Zn content identified in the GB RIL population are shown on the right side of the corresponding linkage group. Red, purple, green, and orange represent the 18GZ, 18ZC, 19GZ, and 19ZC environments, respectively. Cyan represents the QTLs using QEI mapping analysis Full size image batam provinsiWeb7 mei 2012 · A. RNA-Seq reads shown in the Integrative Genomics Viewer. Blue indicates reads that have a forward orientation relative to the reference genome; red indicates reverse orientation. B. Based on the supporting ESTs and the annotation from the gene models, the gl3 gene contains only a single exon. tango project cd